Variant report

Variant	rs74045515
Chromosome Location	chr13:29580860-29580861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs3899580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899581	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899582	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899583	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4258467	1.00[AMR][1000 genomes]
rs4277206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4354784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4474549	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4505164	1.00[AMR][1000 genomes]
rs4511378	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4544098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5004133	1.00[AMR][1000 genomes]
rs57956091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041685	0.89[AFR][1000 genomes]
rs74041686	0.89[AFR][1000 genomes]
rs74041687	0.89[AFR][1000 genomes]
rs74041688	0.89[AFR][1000 genomes]
rs74041689	0.89[AFR][1000 genomes]
rs74041691	0.81[AFR][1000 genomes]
rs74041692	0.89[AFR][1000 genomes]
rs74041693	0.89[AFR][1000 genomes]
rs74041694	0.89[AFR][1000 genomes]
rs74041702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9670420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9706684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29579200-29581000	Enhancers	Fetal Stomach	stomach
2	chr13:29579200-29581200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:29580000-29581000	Enhancers	Fetal Lung	lung
4	chr13:29580200-29581200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:29580200-29581200	Enhancers	Left Ventricle	heart
6	chr13:29580200-29581200	Enhancers	Dnd41	blood
7	chr13:29580400-29581200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:29580600-29581200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr13:29580600-29581200	Enhancers	Aorta	Aorta
10	chr13:29580800-29581200	Flanking Active TSS	Fetal Heart	heart
11	chr13:29580800-29582400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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