Variant report

Variant	rs4514405
Chromosome Location	chr11:8033821-8033822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10769863	1.00[EUR][1000 genomes]
rs12574950	1.00[EUR][1000 genomes]
rs4375428	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395552	1.00[EUR][1000 genomes]
rs60024227	1.00[EUR][1000 genomes]
rs7107979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396713	1.00[EUR][1000 genomes]
rs7926626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8022200-8037200	Weak transcription	HMEC	breast
2	chr11:8032800-8034000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:8033000-8034400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:8033000-8034400	Enhancers	HSMM	muscle
5	chr11:8033000-8034400	Enhancers	HSMMtube	muscle
6	chr11:8033000-8034600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:8033000-8034600	Enhancers	NH-A	brain
8	chr11:8033000-8034600	Enhancers	NHDF-Ad	bronchial
9	chr11:8033000-8034600	Enhancers	Osteobl	bone
10	chr11:8033200-8034200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:8033200-8034200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:8033200-8034400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:8033200-8034400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:8033200-8034400	Enhancers	NHLF	lung
15	chr11:8033200-8034600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:8033400-8034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:8033600-8034000	Weak transcription	Right Atrium	heart
18	chr11:8033600-8034400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:8033600-8034400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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