Variant report

Variant	rs7107979
Chromosome Location	chr11:8035238-8035239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10769863	1.00[EUR][1000 genomes]
rs12574950	1.00[EUR][1000 genomes]
rs4375428	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4514405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395552	1.00[EUR][1000 genomes]
rs60024227	1.00[EUR][1000 genomes]
rs73396713	1.00[EUR][1000 genomes]
rs7926626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8022200-8037200	Weak transcription	HMEC	breast
2	chr11:8034400-8036800	Weak transcription	HSMMtube	muscle
3	chr11:8034400-8037000	Weak transcription	NHLF	lung
4	chr11:8034400-8037200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:8034400-8037200	Weak transcription	HSMM	muscle
6	chr11:8034400-8037400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:8034400-8037600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:8034600-8037000	Weak transcription	Osteobl	bone
9	chr11:8034600-8037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:8034600-8037200	Weak transcription	NHDF-Ad	bronchial
11	chr11:8034600-8037400	Weak transcription	NH-A	brain
12	chr11:8034800-8037200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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