Variant report

Variant	rs4520248
Chromosome Location	chr9:86072563-86072564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10120060	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3860929	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4097648	0.84[EUR][1000 genomes]
rs4877256	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4877772	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6559726	0.86[EUR][1000 genomes]
rs6559727	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032223	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7043959	0.82[EUR][1000 genomes]
rs7855304	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
3	chr9:86061200-86081400	Weak transcription	HepG2	liver
4	chr9:86065800-86073200	Weak transcription	Spleen	Spleen
5	chr9:86065800-86078800	Weak transcription	Left Ventricle	heart
6	chr9:86066600-86074200	Weak transcription	Pancreas	Pancrea
7	chr9:86071200-86072600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr9:86071400-86073000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:86072400-86075200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:86072400-86076000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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