Variant report

Variant	rs10120060
Chromosome Location	chr9:86089328-86089329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10746709	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs10868023	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12343646	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs3860929	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860931	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs3860935	0.84[CEU][hapmap]
rs3860939	0.83[CEU][hapmap]
rs3860943	0.83[CEU][hapmap]
rs4097648	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs4520248	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4877256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877772	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4877778	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4877779	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4877788	0.84[CEU][hapmap]
rs6559726	0.88[EUR][1000 genomes]
rs6559727	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7019435	0.86[EUR][1000 genomes]
rs7032223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043389	0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7043959	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs7855304	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873385	0.83[CEU][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86085000-86090800	Enhancers	HepG2	liver
3	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach
5	chr9:86086400-86089800	Enhancers	Right Atrium	heart
6	chr9:86086600-86090000	Enhancers	Fetal Intestine Small	intestine
7	chr9:86086800-86090000	Enhancers	Small Intestine	intestine
8	chr9:86087000-86092400	Weak transcription	Psoas Muscle	Psoas
9	chr9:86088000-86089400	Active TSS	Rectal Smooth Muscle	rectum
10	chr9:86088400-86089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:86088400-86090000	Enhancers	Fetal Intestine Large	intestine
12	chr9:86088600-86089400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:86088800-86089600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:86088800-86089800	Enhancers	Hela-S3	cervix
15	chr9:86089000-86089400	Enhancers	Duodenum Mucosa	Duodenum
16	chr9:86089000-86089400	Enhancers	GM12878-XiMat	blood
17	chr9:86089000-86090000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:86089200-86089800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr9:86089200-86090000	Enhancers	Rectal Mucosa Donor 31	rectum

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