Variant report

Variant	rs10868023
Chromosome Location	chr9:86139755-86139756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10120060	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10746709	0.83[CHB][hapmap]
rs10780607	0.88[CEU][hapmap]
rs3860929	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs4097647	0.85[CEU][hapmap]
rs4097648	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4877256	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4877787	0.81[ASN][1000 genomes]
rs6559727	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap]
rs6559731	0.88[CEU][hapmap]
rs7019435	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7023693	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032223	0.86[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7041666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7043389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7043959	0.86[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7863524	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10868023	FRMD3	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86129800-86141800	Weak transcription	Left Ventricle	heart
4	chr9:86136600-86141800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:86137000-86141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:86139000-86140600	Weak transcription	Psoas Muscle	Psoas
7	chr9:86139000-86141000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:86139000-86141400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:86139400-86140600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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