Variant report

Variant	rs4097647
Chromosome Location	chr9:86106928-86106929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10780606	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10780607	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868018	0.90[AMR][1000 genomes]
rs10868023	0.85[CEU][hapmap]
rs12343646	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs3860931	0.85[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3860935	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3860936	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860937	0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3860939	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3860943	0.81[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4120051	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4877779	0.86[JPT][hapmap]
rs4877782	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4877788	0.86[CHB][hapmap]
rs6559730	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6559731	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7035629	0.85[AMR][1000 genomes]
rs7043389	0.86[CEU][hapmap]
rs7863524	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7873385	0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86105600-86107800	Enhancers	Fetal Heart	heart
2	chr9:86106000-86107200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr9:86106200-86107200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:86106200-86107800	Enhancers	Left Ventricle	heart
5	chr9:86106200-86107800	Enhancers	NHDF-Ad	bronchial
6	chr9:86106200-86108000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:86106400-86107600	Enhancers	Spleen	Spleen
8	chr9:86106400-86108000	Enhancers	Psoas Muscle	Psoas
9	chr9:86106400-86108000	Enhancers	Right Ventricle	heart
10	chr9:86106600-86107200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:86106600-86107200	Weak transcription	Right Atrium	heart
12	chr9:86106600-86107400	Enhancers	Hela-S3	cervix
13	chr9:86106600-86107600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:86106800-86107000	Enhancers	Small Intestine	intestine
15	chr9:86106800-86107200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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