Variant report

Variant	rs3860943
Chromosome Location	chr9:86113814-86113815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10120060	0.83[CEU][hapmap]
rs10780606	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780607	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868018	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12343646	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs3860929	0.83[CEU][hapmap]
rs3860931	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3860935	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860936	0.91[ASN][1000 genomes]
rs3860937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860939	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4097647	0.81[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4097648	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs4120051	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4877256	0.83[CEU][hapmap]
rs4877778	0.86[EUR][1000 genomes]
rs4877779	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs4877782	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877788	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs6559730	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6559731	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032223	0.81[CEU][hapmap]
rs7035629	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7043959	0.82[CEU][hapmap]
rs7863524	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873385	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86115200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:86107600-86118600	Weak transcription	Ovary	ovary
4	chr9:86107800-86118400	Weak transcription	Left Ventricle	heart
5	chr9:86107800-86118600	Weak transcription	Right Atrium	heart
6	chr9:86108000-86120200	Weak transcription	Psoas Muscle	Psoas
7	chr9:86108000-86120200	Weak transcription	Right Ventricle	heart
8	chr9:86109000-86114400	Weak transcription	Hela-S3	cervix
9	chr9:86110800-86114400	Weak transcription	NHDF-Ad	bronchial
10	chr9:86113400-86114200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:86113800-86114000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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