Variant report

Variant	rs4877778
Chromosome Location	chr9:86093955-86093956
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10120060	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10780606	0.91[EUR][1000 genomes]
rs10868018	0.92[EUR][1000 genomes]
rs12343646	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860931	0.92[EUR][1000 genomes]
rs3860935	0.92[EUR][1000 genomes]
rs3860937	0.92[EUR][1000 genomes]
rs3860939	0.92[EUR][1000 genomes]
rs3860943	0.86[EUR][1000 genomes]
rs4120051	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4877256	0.82[AMR][1000 genomes]
rs4877779	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877782	0.86[EUR][1000 genomes]
rs7032223	0.82[AMR][1000 genomes]
rs7035629	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7855304	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7873385	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86089800-86106600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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