Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10120060	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10780606	0.92[EUR][1000 genomes]
rs10780607	0.81[CHB][hapmap]
rs10868018	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10868020	0.82[JPT][hapmap]
rs11140115	0.82[JPT][hapmap]
rs11140117	0.80[JPT][hapmap]
rs12343646	0.83[CHB][hapmap];0.87[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860929	0.80[AMR][1000 genomes]
rs3860931	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3860935	0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes]
rs3860937	0.88[CHB][hapmap];0.93[EUR][1000 genomes]
rs3860939	0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs3860943	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs4097647	0.86[JPT][hapmap]
rs4120051	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4877256	0.84[AMR][1000 genomes]
rs4877772	0.80[AMR][1000 genomes]
rs4877778	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877782	0.87[EUR][1000 genomes]
rs4877788	0.81[CHB][hapmap]
rs6559727	0.80[AMR][1000 genomes]
rs6559731	0.80[CHB][hapmap]
rs7032223	0.84[AMR][1000 genomes]
rs7035629	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7855304	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7863524	0.80[CHB][hapmap]
rs7873385	0.93[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86089800-86106600	Weak transcription	Hela-S3	cervix

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