Variant report

Variant	rs3860929
Chromosome Location	chr9:86075523-86075524
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10120060	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10746709	0.91[CEU][hapmap]
rs10868023	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs12343646	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs3860931	0.83[CEU][hapmap]
rs3860935	0.84[CEU][hapmap]
rs3860939	0.83[CEU][hapmap]
rs3860943	0.83[CEU][hapmap]
rs4097648	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs4520248	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4877256	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877779	0.80[AMR][1000 genomes]
rs4877788	0.84[CEU][hapmap]
rs6559726	0.89[EUR][1000 genomes]
rs6559727	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7019435	0.85[EUR][1000 genomes]
rs7032223	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043389	0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7043959	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs7855304	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873385	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
3	chr9:86061200-86081400	Weak transcription	HepG2	liver
4	chr9:86065800-86078800	Weak transcription	Left Ventricle	heart
5	chr9:86072400-86076000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:86074600-86079000	Weak transcription	Right Ventricle	heart
7	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
8	chr9:86075200-86083600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum

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