Variant report

Variant	rs10746709
Chromosome Location	chr9:86088871-86088872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10120060	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs10868023	0.83[CHB][hapmap]
rs3860929	0.91[CEU][hapmap]
rs4097648	0.91[CEU][hapmap];0.88[MEX][hapmap]
rs4877256	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs4877788	0.83[CEU][hapmap]
rs6559727	0.91[ASW][hapmap];0.86[CEU][hapmap];0.92[MEX][hapmap]
rs7032223	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7043389	0.83[CHB][hapmap]
rs7043959	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86085000-86090800	Enhancers	HepG2	liver
3	chr9:86086000-86089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach
6	chr9:86086400-86089800	Enhancers	Right Atrium	heart
7	chr9:86086600-86090000	Enhancers	Fetal Intestine Small	intestine
8	chr9:86086800-86090000	Enhancers	Small Intestine	intestine
9	chr9:86087000-86092400	Weak transcription	Psoas Muscle	Psoas
10	chr9:86087600-86089200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:86087600-86089200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr9:86087800-86089000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:86087800-86089000	Flanking Active TSS	GM12878-XiMat	blood
14	chr9:86088000-86089000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr9:86088000-86089000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:86088000-86089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:86088000-86089200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr9:86088000-86089400	Active TSS	Rectal Smooth Muscle	rectum
19	chr9:86088200-86089000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:86088400-86089000	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr9:86088400-86089000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:86088400-86089000	Active TSS	Adipose Nuclei	Adipose
23	chr9:86088400-86089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:86088400-86090000	Enhancers	Fetal Intestine Large	intestine
25	chr9:86088600-86089000	Flanking Active TSS	A549	lung
26	chr9:86088600-86089400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:86088800-86089000	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:86088800-86089000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:86088800-86089000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:86088800-86089000	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr9:86088800-86089200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr9:86088800-86089600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr9:86088800-86089800	Enhancers	Hela-S3	cervix

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