Variant report

Variant	rs4520813
Chromosome Location	chr15:92469843-92469844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92460023..92462750-chr15:92467605..92470507,2	MCF-7	breast:
2	chr15:92461234..92463493-chr15:92469669..92471554,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10775254	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4077721	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4244910	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6496868	0.84[ASN][1000 genomes]
rs6496870	0.84[ASN][1000 genomes]
rs6496872	0.91[ASN][1000 genomes]
rs6496873	0.88[ASN][1000 genomes]
rs6496874	0.91[ASN][1000 genomes]
rs6496875	0.89[ASN][1000 genomes]
rs6496876	0.91[ASN][1000 genomes]
rs7162293	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7174549	0.81[ASN][1000 genomes]
rs7179389	0.88[ASN][1000 genomes]
rs7181500	0.86[ASN][1000 genomes]
rs7182106	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8035875	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8041346	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920349	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92451800-92470200	Weak transcription	Small Intestine	intestine
2	chr15:92457400-92470000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:92460600-92472000	Enhancers	Right Atrium	heart
4	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:92462800-92482600	Weak transcription	HMEC	breast
6	chr15:92463000-92471200	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92463800-92482400	Weak transcription	Esophagus	oesophagus
8	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:92464800-92470000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:92464800-92470000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:92465000-92470200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:92465000-92471600	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:92465200-92470000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:92465200-92474800	Enhancers	Right Ventricle	heart
15	chr15:92465400-92473600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:92465600-92470000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:92465800-92470000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:92465800-92470200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:92466200-92472200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:92466200-92472200	Weak transcription	Spleen	Spleen
21	chr15:92466200-92472400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:92466400-92470000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:92466400-92482200	Weak transcription	Pancreas	Pancrea
24	chr15:92466800-92470000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:92466800-92480200	Weak transcription	Fetal Brain Female	brain
26	chr15:92467200-92472000	Enhancers	Ovary	ovary
27	chr15:92467600-92470000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:92467800-92470000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:92467800-92470200	Enhancers	Stomach Mucosa	stomach
30	chr15:92467800-92471000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:92467800-92471200	Enhancers	Brain Anterior Caudate	brain
32	chr15:92468000-92470000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:92468000-92478800	Weak transcription	Lung	lung
34	chr15:92468200-92470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:92468200-92470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:92468200-92470600	Enhancers	Adipose Nuclei	Adipose
37	chr15:92468800-92471000	Enhancers	Stomach Smooth Muscle	stomach
38	chr15:92469000-92470400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr15:92469000-92471000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:92469000-92472400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:92469200-92470600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr15:92469200-92470800	Weak transcription	Fetal Kidney	kidney
43	chr15:92469200-92471000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:92469200-92472400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:92469200-92477400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:92469400-92470000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:92469400-92470200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:92469400-92470200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:92469400-92470400	Enhancers	Fetal Brain Male	brain
50	chr15:92469400-92470600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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