Variant report

Variant	rs9920349
Chromosome Location	chr15:92471336-92471337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92461234..92463493-chr15:92469669..92471554,2	K562	blood:
2	chr15:92467233..92469491-chr15:92470298..92472244,2	K562	blood:
3	chr15:92470402..92472292-chr15:92475155..92476710,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10775254	0.87[ASN][1000 genomes]
rs11074026	0.81[ASN][1000 genomes]
rs12591949	0.84[ASN][1000 genomes]
rs3924427	0.84[ASN][1000 genomes]
rs4077721	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4244910	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.93[ASN][1000 genomes]
rs4294800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4520813	0.91[ASN][1000 genomes]
rs6496868	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496873	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6496874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496875	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6496876	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162293	0.87[ASN][1000 genomes]
rs7174549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7179389	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7181500	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7182106	0.87[ASN][1000 genomes]
rs8035875	0.87[ASN][1000 genomes]
rs8041346	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92460600-92472000	Enhancers	Right Atrium	heart
2	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:92462800-92482600	Weak transcription	HMEC	breast
4	chr15:92463800-92482400	Weak transcription	Esophagus	oesophagus
5	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:92465000-92471600	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:92465200-92474800	Enhancers	Right Ventricle	heart
8	chr15:92465400-92473600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr15:92466200-92472200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:92466200-92472200	Weak transcription	Spleen	Spleen
11	chr15:92466200-92472400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:92466400-92482200	Weak transcription	Pancreas	Pancrea
13	chr15:92466800-92480200	Weak transcription	Fetal Brain Female	brain
14	chr15:92467200-92472000	Enhancers	Ovary	ovary
15	chr15:92468000-92478800	Weak transcription	Lung	lung
16	chr15:92469000-92472400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:92469200-92472400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:92469200-92477400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:92469400-92483000	Weak transcription	Gastric	stomach
20	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
21	chr15:92469600-92471600	Weak transcription	Colonic Mucosa	Colon
22	chr15:92469600-92471800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:92469600-92472200	Weak transcription	Psoas Muscle	Psoas
24	chr15:92469600-92477200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:92469800-92471600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:92470000-92471400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:92470000-92471400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:92470000-92474200	Weak transcription	Brain Angular Gyrus	brain
29	chr15:92470200-92472000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:92470200-92472600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr15:92470200-92474400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:92470200-92478000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:92470200-92478600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:92470400-92471400	Weak transcription	Fetal Brain Male	brain
35	chr15:92470400-92471400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:92470400-92474400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr15:92470400-92483200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:92470600-92472800	Weak transcription	Adipose Nuclei	Adipose
39	chr15:92470600-92479800	Weak transcription	NHLF	lung
40	chr15:92470800-92471800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr15:92470800-92472400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:92470800-92474400	Weak transcription	Brain Substantia Nigra	brain
43	chr15:92470800-92478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:92471000-92471800	Flanking Active TSS	Fetal Heart	heart
45	chr15:92471000-92472200	Weak transcription	Left Ventricle	heart
46	chr15:92471000-92472800	Weak transcription	Small Intestine	intestine
47	chr15:92471000-92473800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:92471000-92474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:92471000-92474200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:92471000-92475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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