Variant report

Variant	rs6496870
Chromosome Location	chr15:92467422-92467423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92467181..92469484-chr15:92477691..92480563,2	MCF-7	breast:
2	chr15:92467233..92469491-chr15:92470298..92472244,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10775254	0.94[ASN][1000 genomes]
rs11074026	0.88[ASN][1000 genomes]
rs12591949	0.91[ASN][1000 genomes]
rs12594572	0.83[EUR][1000 genomes]
rs3924427	0.91[ASN][1000 genomes]
rs4077721	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4244910	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs4294800	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4520813	0.84[ASN][1000 genomes]
rs6496868	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496872	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496873	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6496874	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496875	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6496876	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496877	0.81[JPT][hapmap]
rs6496878	0.81[JPT][hapmap]
rs7162293	0.94[ASN][1000 genomes]
rs7174549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179389	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7179958	0.81[JPT][hapmap]
rs7181500	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7182106	0.94[ASN][1000 genomes]
rs8035875	0.94[ASN][1000 genomes]
rs8041346	0.91[ASN][1000 genomes]
rs9920349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92451800-92470200	Weak transcription	Small Intestine	intestine
2	chr15:92457200-92467800	Weak transcription	Fetal Thymus	thymus
3	chr15:92457400-92470000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:92457600-92469600	Weak transcription	Hela-S3	cervix
5	chr15:92459000-92467600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:92459400-92467800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:92459600-92468800	Weak transcription	Colonic Mucosa	Colon
8	chr15:92460600-92472000	Enhancers	Right Atrium	heart
9	chr15:92461000-92468000	Enhancers	Left Ventricle	heart
10	chr15:92461400-92469400	Weak transcription	Osteobl	bone
11	chr15:92461600-92468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:92462000-92469600	Enhancers	Brain Substantia Nigra	brain
13	chr15:92462800-92469200	Weak transcription	Aorta	Aorta
14	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:92462800-92482600	Weak transcription	HMEC	breast
16	chr15:92463000-92471200	Enhancers	Brain Hippocampus Middle	brain
17	chr15:92463800-92482400	Weak transcription	Esophagus	oesophagus
18	chr15:92464200-92468000	Enhancers	Lung	lung
19	chr15:92464400-92467600	Enhancers	Fetal Muscle Leg	muscle
20	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:92464800-92469800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:92464800-92470000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:92464800-92470000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:92465000-92468000	Enhancers	Fetal Muscle Trunk	muscle
25	chr15:92465000-92470200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:92465000-92471600	Enhancers	Brain Cingulate Gyrus	brain
27	chr15:92465200-92468200	Enhancers	Fetal Brain Male	brain
28	chr15:92465200-92469200	Enhancers	Brain Angular Gyrus	brain
29	chr15:92465200-92470000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:92465200-92474800	Enhancers	Right Ventricle	heart
31	chr15:92465400-92468400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:92465400-92469200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:92465400-92469400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:92465400-92469800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:92465400-92473600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:92465600-92469200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:92465600-92469400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:92465600-92469800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:92465600-92470000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:92465800-92469600	Weak transcription	NHLF	lung
41	chr15:92465800-92470000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:92465800-92470200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:92466000-92468200	Enhancers	Psoas Muscle	Psoas
44	chr15:92466000-92469000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:92466200-92467600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:92466200-92468200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr15:92466200-92472200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:92466200-92472200	Weak transcription	Spleen	Spleen
49	chr15:92466200-92472400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr15:92466400-92467600	Enhancers	HUES48 Cell Line	embryonic stem cell

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