Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10228891	0.93[CHD][hapmap]
rs10259838	0.94[CHD][hapmap]
rs10499462	0.87[CHD][hapmap];0.86[GIH][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12540121	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12669997	0.87[CHD][hapmap]
rs12699654	0.94[CHD][hapmap]
rs12699655	0.94[CHD][hapmap]
rs1404613	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1404615	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1404616	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1525099	0.82[CHD][hapmap]
rs1568846	0.87[CHD][hapmap]
rs1568847	0.87[CHD][hapmap]
rs1830029	0.86[EUR][1000 genomes]
rs1997040	0.87[CHD][hapmap]
rs4719417	0.87[CHD][hapmap]
rs6461120	0.87[CHD][hapmap]
rs6944222	0.80[ASN][1000 genomes]
rs6947566	0.87[CHD][hapmap]
rs6965637	0.87[CHD][hapmap]
rs6966274	0.87[CHD][hapmap]
rs885438	0.85[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs9639212	0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4521664	AGR2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14720400-14723600	Weak transcription	Brain Anterior Caudate	brain
4	chr7:14720800-14728400	Weak transcription	Brain Angular Gyrus	brain

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