Variant report

Variant	rs6944222
Chromosome Location	chr7:14728265-14728266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:16666192..16668133-chr7:14727799..14729299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127526	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10228891	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10259838	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10262035	0.90[EUR][1000 genomes]
rs10950534	0.85[AMR][1000 genomes]
rs11971649	0.81[AMR][1000 genomes]
rs12536592	0.85[ASN][1000 genomes]
rs12537147	0.85[ASN][1000 genomes]
rs12539208	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12669997	0.86[ASN][1000 genomes]
rs12699654	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12699655	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1357856	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1357861	0.93[EUR][1000 genomes]
rs1357862	0.94[EUR][1000 genomes]
rs1357863	0.94[EUR][1000 genomes]
rs1404613	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1404614	0.88[EUR][1000 genomes]
rs1404615	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1404616	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1525074	0.81[ASN][1000 genomes]
rs1525078	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1525099	0.84[AMR][1000 genomes]
rs1568846	0.84[ASN][1000 genomes]
rs1568847	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17606181	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17668635	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17668761	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1997040	0.81[ASN][1000 genomes]
rs2293339	0.88[EUR][1000 genomes]
rs4521664	0.80[ASN][1000 genomes]
rs4719417	0.85[ASN][1000 genomes]
rs4721360	0.81[AMR][1000 genomes]
rs6947566	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6954517	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6956435	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6956606	0.83[EUR][1000 genomes]
rs6965637	0.85[ASN][1000 genomes]
rs6966274	0.85[ASN][1000 genomes]
rs7784799	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7785767	0.86[ASN][1000 genomes]
rs7791900	0.89[EUR][1000 genomes]
rs885438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639210	0.88[EUR][1000 genomes]
rs9639212	0.86[ASN][1000 genomes]
rs9639213	0.86[ASN][1000 genomes]
rs9784967	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3380049	chr7:14728256-14728594	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14720800-14728400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:14727400-14728400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:14727400-14728400	Enhancers	Liver	Liver
6	chr7:14727600-14728400	Enhancers	Fetal Lung	lung
7	chr7:14727800-14728600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:14728000-14728400	Enhancers	Fetal Kidney	kidney
9	chr7:14728000-14729200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:14728200-14729200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:14728200-14729400	Weak transcription	Osteobl	bone

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