Variant report

Variant	rs1404616
Chromosome Location	chr7:14726096-14726097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10228891	0.81[CEU][hapmap];0.88[GIH][hapmap];0.88[AMR][1000 genomes]
rs10259838	0.88[GIH][hapmap];0.84[AMR][1000 genomes]
rs10262035	0.89[EUR][1000 genomes]
rs10278975	0.80[AMR][1000 genomes]
rs10279650	0.82[CHB][hapmap]
rs10279786	0.82[CHB][hapmap]
rs10950534	0.87[AMR][1000 genomes]
rs11971649	0.88[GIH][hapmap];0.84[AMR][1000 genomes]
rs12539208	0.80[CEU][hapmap];0.89[AMR][1000 genomes]
rs12669997	0.81[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap]
rs12699654	0.85[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs12699655	0.85[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1357856	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs1357860	0.82[CHB][hapmap]
rs1357861	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs1357862	0.93[EUR][1000 genomes]
rs1357863	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1404613	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404614	0.96[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs1404615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525078	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1525099	0.81[CEU][hapmap];0.85[GIH][hapmap];0.87[AMR][1000 genomes]
rs1568843	0.82[CHB][hapmap]
rs1568844	0.82[CHB][hapmap]
rs1568846	0.81[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap]
rs1568847	0.85[CEU][hapmap];0.90[GIH][hapmap];0.86[AMR][1000 genomes]
rs17606181	0.84[AMR][1000 genomes]
rs17668761	0.89[AMR][1000 genomes]
rs1830028	0.80[AMR][1000 genomes]
rs1997040	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs2293339	0.96[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs2358025	0.82[CHB][hapmap]
rs4027159	0.82[CHB][hapmap]
rs4236282	0.82[CHB][hapmap]
rs4424153	0.82[CHB][hapmap]
rs4521664	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4719417	0.83[GIH][hapmap];0.87[MEX][hapmap]
rs4721360	0.83[AMR][1000 genomes]
rs6461120	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs6944222	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6947566	0.81[CEU][hapmap];0.88[GIH][hapmap];0.88[AMR][1000 genomes]
rs6954517	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6956435	0.81[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6956606	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6965637	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs6966274	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs7784799	0.81[CEU][hapmap];0.87[AMR][1000 genomes]
rs7791900	0.96[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs7793583	0.82[CHB][hapmap]
rs7801612	0.82[CHB][hapmap]
rs885438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9639210	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs9639212	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs9784967	0.81[CEU][hapmap];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14720800-14728400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:14722400-14726800	Weak transcription	Osteobl	bone
5	chr7:14725400-14727400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:14725600-14727600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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