Variant report

Variant	rs1357861
Chromosome Location	chr7:14719872-14719873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10228891	0.81[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap]
rs10259838	0.85[GIH][hapmap];0.82[TSI][hapmap]
rs10262035	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11971649	0.85[GIH][hapmap]
rs12539208	0.80[CEU][hapmap]
rs12669997	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs12699654	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs12699655	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs1357856	0.81[CEU][hapmap]
rs1357862	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1404613	0.96[CEU][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs1404614	0.88[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1404615	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1404616	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs1525078	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1525099	0.81[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs1568846	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1568847	0.85[CEU][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2293339	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719417	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs6461120	0.81[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs6944222	0.93[EUR][1000 genomes]
rs6947566	0.81[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs6954517	0.88[CEU][hapmap]
rs6956435	0.81[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs6956606	0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7784799	0.81[CEU][hapmap]
rs7791900	0.96[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs885438	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9639210	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9639212	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs9784967	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1357861	DGKB	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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