Variant report

Variant	rs1525078
Chromosome Location	chr7:14717718-14717719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10228891	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10262035	0.83[EUR][1000 genomes]
rs10279650	0.82[CHB][hapmap]
rs10279786	1.00[CHB][hapmap]
rs10950534	0.81[AMR][1000 genomes]
rs12539208	0.83[AMR][1000 genomes]
rs12669997	0.81[CEU][hapmap]
rs12699654	0.84[CEU][hapmap]
rs12699655	0.84[CEU][hapmap]
rs1357856	0.82[AMR][1000 genomes]
rs1357860	0.82[CHB][hapmap]
rs1357861	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1357862	0.88[EUR][1000 genomes]
rs1357863	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1404613	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1404614	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1404615	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1404616	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1525086	0.82[CHB][hapmap]
rs1525099	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs1568843	0.82[CHB][hapmap]
rs1568844	0.82[CHB][hapmap]
rs1568846	0.81[CEU][hapmap]
rs1568847	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs17606181	0.81[AMR][1000 genomes]
rs17668761	0.83[AMR][1000 genomes]
rs2293339	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2358025	1.00[CHB][hapmap]
rs4027159	0.82[CHB][hapmap]
rs4236282	1.00[CHB][hapmap]
rs4424153	1.00[CHB][hapmap]
rs4721360	0.80[AMR][1000 genomes]
rs6944222	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6947566	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs6954517	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs6956435	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956606	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7784799	0.81[AMR][1000 genomes]
rs7791900	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7793583	0.82[CHB][hapmap]
rs7801612	0.82[CHB][hapmap]
rs885438	0.96[CEU][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9639210	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs9639212	0.81[CEU][hapmap]
rs9784967	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14714600-14717800	Weak transcription	Fetal Heart	heart

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