Variant report

Variant	rs2358025
Chromosome Location	chr7:14707024-14707025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10279650	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs10279786	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs10950533	0.91[MKK][hapmap];0.85[YRI][hapmap]
rs1357858	0.80[ASW][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap]
rs1357860	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1404611	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1404612	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs1404613	0.82[CHB][hapmap]
rs1404615	0.82[CHB][hapmap]
rs1404616	0.82[CHB][hapmap]
rs1464822	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525078	1.00[CHB][hapmap]
rs1525082	0.84[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1525086	0.80[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.87[MKK][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568843	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1568844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2204409	0.86[ASN][1000 genomes]
rs2462567	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4027159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236282	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4424153	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6461117	0.82[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6953043	0.87[AFR][1000 genomes]
rs6953418	0.87[AFR][1000 genomes]
rs6954056	0.87[AFR][1000 genomes]
rs6956435	1.00[CHB][hapmap]
rs7785131	0.80[CEU][hapmap]
rs7793583	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7801612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs885438	0.82[CHB][hapmap]
rs940689	0.83[CEU][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3362199	chr7:14684761-14707777	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14706400-14712000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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