Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10279650	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10279786	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs11767076	0.85[JPT][hapmap]
rs1357858	0.85[JPT][hapmap]
rs1357860	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1404612	1.00[JPT][hapmap]
rs1464822	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1525082	0.80[ASN][1000 genomes]
rs1525086	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs1568843	0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1568844	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2358025	0.82[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2462567	0.86[ASN][1000 genomes]
rs4027159	0.82[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs4236282	0.82[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs4424153	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7785131	0.83[JPT][hapmap]
rs7793583	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7801612	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs940689	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712000-14712800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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