Variant report

Variant	rs4424153
Chromosome Location	chr7:14680700-14680701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10279650	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10279786	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[TSI][hapmap]
rs11767076	0.85[JPT][hapmap]
rs1357858	1.00[CHD][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap]
rs1357860	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1404611	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1404612	0.92[JPT][hapmap]
rs1404613	0.82[CHB][hapmap]
rs1404615	0.82[CHB][hapmap]
rs1404616	0.82[CHB][hapmap]
rs1464822	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1525078	1.00[CHB][hapmap]
rs1525082	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1525086	0.82[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1568843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1568844	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2204409	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358025	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2462567	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4027159	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs4236282	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs6461117	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6956435	1.00[CHB][hapmap]
rs7793583	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7801612	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs885438	0.82[CHB][hapmap]
rs940689	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3390952	chr7:14680576-14681306	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2035361	chr7:14680673-14681152	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14679200-14683200	Weak transcription	Pancreas	Pancrea
2	chr7:14680400-14684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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