Variant report

Variant	rs4522204
Chromosome Location	chr12:60315298-60315299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10506404	1.00[EUR][1000 genomes]
rs1105924	0.96[EUR][1000 genomes]
rs17123263	0.96[EUR][1000 genomes]
rs17123277	0.96[EUR][1000 genomes]
rs17574734	1.00[EUR][1000 genomes]
rs17652271	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35649894	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4129723	0.82[EUR][1000 genomes]
rs4129724	0.96[EUR][1000 genomes]
rs4376941	1.00[EUR][1000 genomes]
rs4597101	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4597102	1.00[EUR][1000 genomes]
rs56865752	1.00[EUR][1000 genomes]
rs57557459	1.00[EUR][1000 genomes]
rs60619726	0.96[EUR][1000 genomes]
rs61160765	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv826393	chr12:60293625-60359283	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60296800-60320400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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