Variant report

Variant	rs57557459
Chromosome Location	chr12:60364186-60364187
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10506404	1.00[EUR][1000 genomes]
rs1105924	0.96[EUR][1000 genomes]
rs17123263	0.96[EUR][1000 genomes]
rs17123277	0.96[EUR][1000 genomes]
rs17574734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17652271	0.88[EUR][1000 genomes]
rs35649894	0.92[EUR][1000 genomes]
rs4129723	0.82[EUR][1000 genomes]
rs4129724	0.96[EUR][1000 genomes]
rs4376941	1.00[EUR][1000 genomes]
rs4522204	1.00[EUR][1000 genomes]
rs4597101	0.85[EUR][1000 genomes]
rs4597102	1.00[EUR][1000 genomes]
rs56865752	1.00[EUR][1000 genomes]
rs60619726	0.96[EUR][1000 genomes]
rs61160765	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60363600-60364200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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