Variant report

Variant	rs61160765
Chromosome Location	chr12:60282599-60282600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10506404	0.96[EUR][1000 genomes]
rs1105924	0.92[EUR][1000 genomes]
rs17123263	0.92[EUR][1000 genomes]
rs17123277	0.92[EUR][1000 genomes]
rs17574734	0.96[EUR][1000 genomes]
rs17652271	0.84[EUR][1000 genomes]
rs35649894	0.88[EUR][1000 genomes]
rs4129724	0.92[EUR][1000 genomes]
rs4376941	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4522204	0.96[EUR][1000 genomes]
rs4575314	0.92[AMR][1000 genomes]
rs4597101	0.81[EUR][1000 genomes]
rs4597102	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56865752	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57557459	0.96[EUR][1000 genomes]
rs60619726	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1050201	chr12:60269149-60297702	Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1055021	chr12:60269149-60302823	Enhancers Flanking Active TSS Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60242200-60295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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