Variant report

Variant	rs4533675
Chromosome Location	chr3:75483562-75483563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:75483171-75484026	U87	brain:	n/a	n/a
2	POLR2A	chr3:75483511-75483840	A549	lung:	n/a	n/a
3	FOS	chr3:75483370-75483710	MCF10A-Er-Src	breast:	n/a	chr3:75483515-75483527 chr3:75483517-75483525
4	MAX	chr3:75483426-75485067	Hela-S3	cervix:	n/a	chr3:75484265-75484275 chr3:75483517-75483526 chr3:75484262-75484271 chr3:75484356-75484366 chr3:75484767-75484777
5	SP1	chr3:75483375-75485442	GM12878	blood:	n/a	chr3:75485205-75485217 chr3:75484994-75485003 chr3:75484744-75484753 chr3:75484357-75484369 chr3:75485149-75485158 chr3:75484408-75484420 chr3:75484846-75484858 chr3:75484264-75484276 chr3:75484357-75484369 chr3:75484897-75484909 chr3:75484266-75484275 chr3:75484827-75484836 chr3:75484825-75484837 chr3:75484408-75484419 chr3:75485147-75485158 chr3:75484847-75484856 chr3:75484359-75484368 chr3:75484354-75484368 chr3:75484846-75484858 chr3:75484734-75484743 chr3:75485147-75485159 chr3:75484410-75484419 chr3:75485207-75485216 chr3:75484357-75484368 chr3:75484994-75485003 chr3:75484358-75484368 chr3:75484396-75484408 chr3:75484408-75484420 chr3:75485205-75485216 chr3:75484398-75484407 chr3:75484732-75484744 chr3:75484729-75484743 chr3:75484396-75484407 chr3:75484359-75484368 chr3:75484825-75484837 chr3:75484265-75484274 chr3:75484993-75485002 chr3:75484848-75484857 chr3:75484993-75485003 chr3:75484732-75484744 chr3:75484264-75484276 chr3:75484397-75484406 chr3:75485147-75485159 chr3:75484358-75484368 chr3:75484743-75484755 chr3:75484894-75484908 chr3:75484265-75484275 chr3:75485175-75485184 chr3:75484358-75484367 chr3:75484743-75484755 chr3:75485037-75485046 chr3:75484265-75484275 chr3:75484992-75485004 chr3:75484843-75484857 chr3:75485205-75485217 chr3:75485206-75485215 chr3:75484322-75484334 chr3:75485202-75485216 chr3:75484745-75484754 chr3:75484733-75484742 chr3:75484992-75485004
6	CTCF	chr3:75483560-75483710	AG04450	lung:	n/a	n/a
7	CTCF	chr3:75483460-75483610	SK-N-SH_RA	brain:	n/a	n/a
8	TCF3	chr3:75483464-75484402	GM12878	blood:	n/a	chr3:75483839-75483853
9	POLR2A	chr3:75483493-75484347	A549	lung:	n/a	n/a
10	CTCF	chr3:75483480-75483630	HBMEC	blood vessel:	n/a	n/a
11	CTCF	chr3:75483500-75483650	GM12872	blood:	n/a	n/a
12	CTCF	chr3:75483500-75483650	BE2_C	brain:	n/a	n/a
13	GABPA	chr3:75483529-75483684	Hela-S3	cervix:	n/a	n/a
14	SP1	chr3:75483399-75483992	GM12878	blood:	n/a	n/a
15	TAF1	chr3:75483486-75483873	GM12892	blood:	n/a	n/a
16	MAX	chr3:75483549-75484932	K562	blood:	n/a	chr3:75484265-75484275 chr3:75484262-75484271 chr3:75484356-75484366 chr3:75484767-75484777
17	PAX5	chr3:75483014-75485756	GM12878	blood:	n/a	chr3:75485199-75485218 chr3:75484840-75484859
18	POLR2A	chr3:75481957-75485368	Hela-S3	cervix:	n/a	n/a
19	IRF4	chr3:75482832-75484238	GM12878	blood:	n/a	n/a
20	JUND	chr3:75483520-75483832	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:75483379-75485534	SK-N-MC	brain:	n/a	n/a
22	TAF1	chr3:75483539-75484368	GM12891	blood:	n/a	n/a
23	MXI1	chr3:75483179-75485820	SK-N-SH	brain:	n/a	n/a
24	POLR2A	chr3:75483485-75485329	GM12878	blood:	n/a	n/a
25	POLR2A	chr3:75483382-75484808	MCF10A-Er-Src	breast:	n/a	n/a
26	GABPA	chr3:75483375-75484633	Hela-S3	cervix:	n/a	chr3:75484358-75484367 chr3:75484265-75484274
27	POLR2A	chr3:75483492-75484457	ProgFib	skin:	n/a	n/a
28	JUND	chr3:75483444-75484249	A549	lung:	n/a	chr3:75483515-75483527 chr3:75483517-75483525
29	POLR2A	chr3:75483483-75483689	SK-N-SH	brain:	n/a	n/a
30	TAF1	chr3:75483444-75485438	HepG2	liver:	n/a	n/a
31	POLR2A	chr3:75483362-75484353	GM12892	blood:	n/a	n/a
32	POLR2A	chr3:75483490-75484391	K562	blood:	n/a	n/a
33	CEBPB	chr3:75483332-75483591	K562	blood:	n/a	n/a
34	EBF1	chr3:75483433-75483890	GM12878	blood:	n/a	chr3:75483636-75483645 chr3:75483636-75483645 chr3:75483635-75483645 chr3:75483634-75483647
35	YY1	chr3:75483432-75484447	A549	lung:	n/a	chr3:75484358-75484367 chr3:75484338-75484352
36	YY1	chr3:75483483-75483641	K562	blood:	n/a	n/a
37	CTCF	chr3:75483480-75483630	BJ	skin:	n/a	n/a
38	POLR2A	chr3:75483440-75484345	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr3:75483315-75483689	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr3:75483213-75485307	K562	blood:	n/a	n/a
41	USF1	chr3:75483316-75484358	A549	lung:	n/a	n/a
42	POLR2A	chr3:75481807-75485392	U87	brain:	n/a	n/a
43	POU2F2	chr3:75482370-75485210	GM12878	blood:	n/a	chr3:75484742-75484754
44	EBF1	chr3:75482700-75484189	GM12878	blood:	n/a	chr3:75483636-75483645 chr3:75483636-75483645 chr3:75483635-75483645 chr3:75483634-75483647
45	RXRA	chr3:75483458-75483844	HepG2	liver:	n/a	n/a
46	POLR2A	chr3:75483327-75484372	GM12891	blood:	n/a	n/a
47	MAZ	chr3:75483240-75485461	IMR90	lung:	n/a	chr3:75484265-75484275 chr3:75483517-75483526 chr3:75484262-75484271 chr3:75484356-75484366
48	POLR2A	chr3:75483324-75483888	SK-N-SH	brain:	n/a	n/a
49	HEY1	chr3:75483444-75486277	HepG2	liver:	n/a	chr3:75484739-75484754
50	POLR2A	chr3:75483446-75485435	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000272690	TF binding region

Extended variants
information (count: 295 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28520726	0.85[ASN][1000 genomes]
rs4446234	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4577493	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57970000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58318198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58692482	0.94[AFR][1000 genomes]
rs61032550	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6549735	0.87[ASN][1000 genomes]
rs6795994	0.84[EUR][1000 genomes]
rs72628671	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7637780	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7639021	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:283 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916594	chr3:74943399-75540161	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv997253	chr3:75168497-76021627	Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
3	nsv876962	chr3:75198904-75540544	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1002218	chr3:75221611-75702475	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv2422240	chr3:75244279-75595933	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
6	nsv432427	chr3:75249409-75676582	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	esv2422315	chr3:75250088-75853296	Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
8	nsv432428	chr3:75269488-75697169	Bivalent Enhancer Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
9	esv2757874	chr3:75346159-75617595	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv428086	chr3:75346159-75914792	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
11	nsv876966	chr3:75350891-75489636	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv876967	chr3:75350891-75572199	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv529016	chr3:75361506-75836858	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
14	nsv432429	chr3:75363558-75639894	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	nsv432432	chr3:75377715-75639894	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	nsv432433	chr3:75377715-75774501	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
17	nsv517173	chr3:75379085-75647887	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	esv20724	chr3:75381808-75700055	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
19	nsv432434	chr3:75387457-75639894	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv460705	chr3:75388161-75568219	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	nsv590642	chr3:75388161-75568219	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv432435	chr3:75391549-75639894	Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
23	esv1830303	chr3:75391642-75616293	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	esv2754619	chr3:75392078-75564871	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	esv2752016	chr3:75392078-75639894	Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
26	esv2756999	chr3:75392078-76003036	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv2755877	chr3:75392373-75623338	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
28	esv2752919	chr3:75392373-75639894	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
29	nsv432436	chr3:75392373-75639894	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	nsv432441	chr3:75392373-75676582	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	esv2755954	chr3:75392373-75697169	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
32	nsv432446	chr3:75392373-75697169	Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
33	esv2754986	chr3:75392373-75735141	ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
34	esv2752017	chr3:75392373-75754704	Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
35	esv2752018	chr3:75393730-75776083	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
36	esv2756429	chr3:75394265-75595318	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
37	esv2755970	chr3:75394265-75639894	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
38	esv2755824	chr3:75394265-75734088	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
39	esv2756116	chr3:75394265-75735141	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
40	nsv590643	chr3:75394787-75530895	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	nsv876969	chr3:75394787-75561341	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
42	nsv965176	chr3:75395167-75669055	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
43	esv2763755	chr3:75396818-75792056	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
44	nsv1005724	chr3:75396818-75881261	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
45	nsv999165	chr3:75404163-75532419	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
46	nsv1010325	chr3:75406386-75516091	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
47	nsv1013432	chr3:75406386-75549934	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1002268	chr3:75406386-75586793	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
49	nsv1012365	chr3:75406386-75639894	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
50	nsv590644	chr3:75407145-75530895	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75467600-75484400	Weak transcription	Stomach Mucosa	stomach
2	chr3:75467800-75483600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:75469600-75483600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:75470200-75483600	Weak transcription	Brain Substantia Nigra	brain
5	chr3:75471800-75483600	Weak transcription	Fetal Thymus	thymus
6	chr3:75472000-75483600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:75472000-75483600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:75473000-75483800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:75475200-75483600	Weak transcription	Fetal Kidney	kidney
10	chr3:75475400-75483600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:75475600-75483600	Weak transcription	Small Intestine	intestine
12	chr3:75475800-75483600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:75476800-75483600	Weak transcription	Thymus	Thymus
14	chr3:75477000-75483600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:75477200-75483600	Weak transcription	Ovary	ovary
16	chr3:75477200-75483800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:75477400-75483800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:75477400-75483800	Weak transcription	Aorta	Aorta
19	chr3:75481200-75483600	Enhancers	Adipose Nuclei	Adipose
20	chr3:75481200-75483600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:75481600-75483600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:75482200-75483600	Enhancers	Fetal Muscle Leg	muscle
23	chr3:75482200-75485200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:75482200-75485800	Active TSS	A549	lung
25	chr3:75482600-75483600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:75482600-75483600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr3:75482800-75483600	Weak transcription	Esophagus	oesophagus
28	chr3:75482800-75483600	Enhancers	Fetal Stomach	stomach
29	chr3:75482800-75483600	Weak transcription	Lung	lung
30	chr3:75482800-75485200	Active TSS	HSMM	muscle
31	chr3:75483000-75483600	Enhancers	Liver	Liver
32	chr3:75483200-75483600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:75483200-75483600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr3:75483200-75483600	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr3:75483200-75483600	Enhancers	Fetal Lung	lung
36	chr3:75483200-75483600	Flanking Active TSS	HUVEC	blood vessel
37	chr3:75483200-75483800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:75483200-75483800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:75483200-75483800	Flanking Active TSS	Dnd41	blood
40	chr3:75483200-75485200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:75483200-75485200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:75483200-75485200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:75483200-75485200	Active TSS	NH-A	brain
44	chr3:75483200-75485400	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr3:75483200-75485400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:75483200-75485400	Active TSS	HMEC	breast
47	chr3:75483200-75485400	Active TSS	NHLF	lung
48	chr3:75483200-75485600	Active TSS	Brain Hippocampus Middle	brain
49	chr3:75483200-75485600	Active TSS	Hela-S3	cervix
50	chr3:75483200-75485800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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