Variant report

Variant	rs7639021
Chromosome Location	chr3:75482194-75482195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:75482005-75482632	IMR90	lung:	n/a	chr3:75482314-75482323 chr3:75482197-75482206
2	SIX5	chr3:75482138-75482390	K562	blood:	n/a	n/a
3	JUND	chr3:75481898-75482422	HepG2	liver:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
4	GATA3	chr3:75482085-75482461	SK-N-SH	brain:	n/a	n/a
5	YY1	chr3:75482055-75482374	SK-N-SH_RA	brain:	n/a	n/a
6	EP300	chr3:75482137-75482343	Hela-S3	cervix:	n/a	chr3:75482197-75482206
7	POLR2A	chr3:75481980-75482423	HUVEC	blood vessel:	n/a	n/a
8	CEBPB	chr3:75481974-75482555	IMR90	lung:	n/a	chr3:75482441-75482452 chr3:75482330-75482338
9	ZMIZ1	chr3:75482165-75482332	K562	blood:	n/a	n/a
10	MAX	chr3:75482142-75482365	Hela-S3	cervix:	n/a	chr3:75482314-75482323 chr3:75482197-75482206
11	FOXP2	chr3:75482109-75482316	PFSK-1	brain:	n/a	n/a
12	FOSL2	chr3:75481825-75482884	HepG2	liver:	n/a	chr3:75481825-75481835 chr3:75481827-75481838 chr3:75482195-75482206 chr3:75482197-75482206 chr3:75482198-75482207 chr3:75481825-75481835
13	SP1	chr3:75482064-75482480	HCT-116	colon:	n/a	n/a
14	MYC	chr3:75482096-75482232	MCF10A-Er-Src	breast:	n/a	chr3:75482197-75482206
15	RCOR1	chr3:75482140-75482662	K562	blood:	n/a	n/a
16	CEBPB	chr3:75482014-75482427	Hela-S3	cervix:	n/a	chr3:75482330-75482338
17	FOSL2	chr3:75482033-75482467	A549	lung:	n/a	chr3:75482195-75482206 chr3:75482197-75482206 chr3:75482198-75482207
18	KAP1	chr3:75482139-75482352	U2OS	brain:	n/a	chr3:75482196-75482205
19	STAT3	chr3:75482174-75482325	MCF10A-Er-Src	breast:	n/a	chr3:75482293-75482301
20	CHD1	chr3:75482014-75482648	IMR90	lung:	n/a	n/a
21	MAFK	chr3:75482021-75482460	IMR90	lung:	n/a	n/a
22	POLR2A	chr3:75481957-75485368	Hela-S3	cervix:	n/a	n/a
23	ATF3	chr3:75482035-75482349	A549	lung:	n/a	n/a
24	FOS	chr3:75482026-75482475	HUVEC	blood vessel:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
25	YY1	chr3:75482096-75482371	K562	blood:	n/a	n/a
26	JUND	chr3:75482002-75482372	A549	lung:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
27	ATF3	chr3:75482021-75482341	K562	blood:	n/a	n/a
28	POLR2A	chr3:75482042-75482391	MCF10A-Er-Src	breast:	n/a	n/a
29	POLR2A	chr3:75482019-75482624	HepG2	liver:	n/a	n/a
30	POLR2A	chr3:75482002-75482515	PANC-1	pancreas:	n/a	n/a
31	FOS	chr3:75482031-75482393	MCF10A-Er-Src	breast:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
32	MXI1	chr3:75482060-75482707	IMR90	lung:	n/a	chr3:75482308-75482323 chr3:75482310-75482325
33	JUND	chr3:75481996-75482420	K562	blood:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
34	RCOR1	chr3:75482065-75482454	HepG2	liver:	n/a	n/a
35	FOSL1	chr3:75482098-75482364	K562	blood:	n/a	chr3:75482196-75482207 chr3:75482197-75482206 chr3:75482198-75482207
36	ZKSCAN1	chr3:75482168-75482368	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr3:75482097-75482456	MCF10A-Er-Src	breast:	n/a	n/a
38	JUN	chr3:75482019-75482391	HUVEC	blood vessel:	n/a	chr3:75482197-75482206 chr3:75482198-75482207
39	POLR2A	chr3:75481807-75485392	U87	brain:	n/a	n/a
40	TCF12	chr3:75482060-75482467	SK-N-SH	brain:	n/a	chr3:75482294-75482302
41	POLR2A	chr3:75482103-75482366	HCT-116	colon:	n/a	n/a
42	RXRA	chr3:75481933-75482548	HepG2	liver:	n/a	chr3:75482139-75482148
43	RXRA	chr3:75482075-75482474	SK-N-SH	brain:	n/a	chr3:75482139-75482148
44	TCF12	chr3:75482000-75482372	A549	lung:	n/a	chr3:75482294-75482302
45	POLR2A	chr3:75482099-75482371	HUVEC	blood vessel:	n/a	n/a
46	FOS	chr3:75482032-75482410	MCF10A-Er-Src	breast:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207
47	JUN	chr3:75482023-75482524	K562	blood:	n/a	chr3:75482197-75482206 chr3:75482198-75482207
48	SMC3	chr3:75482051-75482247	Hela-S3	cervix:	n/a	n/a
49	UBTF	chr3:75482153-75482337	K562	blood:	n/a	n/a
50	JUND	chr3:75481992-75482346	HepG2	liver:	n/a	chr3:75482197-75482206 chr3:75482196-75482207 chr3:75482198-75482207

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:75482182-75482232	NHDF-neo	bronchial:	n/a
2	chr3:75482182-75482232	AG09309	skin:	n/a
3	chr3:75482182-75482232	Jurkat	blood:	n/a
4	chr3:75482182-75482232	Caco-2	colon:	n/a
5	chr3:75482182-75482232	Hela-S3	cervix:	n/a
6	chr3:75482182-75482232	ECC-1	luminal epithelium:	n/a
7	chr3:75482182-75482232	HCT-116	colon:	n/a
8	chr3:75482182-75482232	MCF-7	breast:	n/a
9	chr3:75482182-75482232	ProgFib	skin:	n/a
10	chr3:75482182-75482232	HCPEpiC	choroid plexus:	n/a
11	chr3:75482182-75482232	SKMC	muscle:	n/a
12	chr3:75482182-75482232	PrEC	prostate:	n/a
13	chr3:75482182-75482232	HRPEpiC	eye:	n/a
14	chr3:75482182-75482232	HEEpiC	esophagus:	n/a
15	chr3:75482182-75482232	LNCaP	prostate:	n/a
16	chr3:75482182-75482232	HRE	kidney:	n/a
17	chr3:75482182-75482232	MCF10A-Er-Src	breast:	n/a
18	chr3:75482182-75482232	HCM	heart:	n/a
19	chr3:75482182-75482232	SK-N-SH	brain:	n/a
20	chr3:75482182-75482232	BE2_C	brain:	n/a
21	chr3:75482182-75482232	GM12892	blood:	n/a
22	chr3:75482182-75482232	AG04450	lung:	fetal
23	chr3:75482182-75482232	HAEpiC	amniotic membrane:	n/a
24	chr3:75482182-75482232	AG04449	skin:	fetal
25	chr3:75482182-75482232	NHBE	bronchial:	n/a
26	chr3:75482182-75482232	HL-60	blood:	n/a
27	chr3:75482182-75482232	HUVEC	blood vessel:	n/a
28	chr3:75482182-75482232	HCF	heart:	n/a
29	chr3:75482182-75482232	GM06990	blood:	n/a
30	chr3:75482182-75482232	AG09319	gingival:	n/a
31	chr3:75482182-75482232	U87	brain:	n/a
32	chr3:75482182-75482232	PANC-1	pancreas:	n/a
33	chr3:75482182-75482232	HIPEpiC	eye:	n/a
34	chr3:75482182-75482232	NT2-D1	testis:	n/a
35	chr3:75482182-75482232	HepG2	liver:	n/a
36	chr3:75482182-75482232	GM12878	blood:	n/a
37	chr3:75482182-75482232	NH-A	brain:	n/a
38	chr3:75482182-75482232	A549	lung:	n/a
39	chr3:75482182-75482232	HMEC	breast:	n/a
40	chr3:75482182-75482232	Hepatocyte	liver:	n/a
41	chr3:75482182-75482232	HNPCEpiC	eye:	n/a
42	chr3:75482182-75482232	K562	blood:	n/a
43	chr3:75482182-75482232	SK-N-MC	brain:	n/a
44	chr3:75482182-75482232	GM12891	blood:	n/a
45	chr3:75482182-75482232	ovcar-3	ovarian:	n/a
46	chr3:75482182-75482232	IMR90	lung:	fetal
47	chr3:75482182-75482232	SK-N-SH_RA	brain:	n/a
48	chr3:75482182-75482232	CMK	blood:	n/a
49	chr3:75482182-75482232	AG10803	skin:	n/a
50	chr3:75482182-75482232	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000272690	TF binding region
ENSG00000272690	CpG island

Extended variants
information (count: 291 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4446234	0.89[EUR][1000 genomes]
rs4533675	0.84[EUR][1000 genomes]
rs4577493	0.81[EUR][1000 genomes]
rs57970000	0.84[EUR][1000 genomes]
rs58318198	0.89[EUR][1000 genomes]
rs6549737	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6795994	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72628671	0.89[EUR][1000 genomes]
rs7636740	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637780	0.89[EUR][1000 genomes]
rs9681952	0.83[AFR][1000 genomes]
rs9714401	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:279 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916594	chr3:74943399-75540161	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv997253	chr3:75168497-76021627	Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
3	nsv876962	chr3:75198904-75540544	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1002218	chr3:75221611-75702475	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv2422240	chr3:75244279-75595933	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
6	nsv432427	chr3:75249409-75676582	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	esv2422315	chr3:75250088-75853296	Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
8	nsv432428	chr3:75269488-75697169	Bivalent Enhancer Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
9	esv2757874	chr3:75346159-75617595	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv428086	chr3:75346159-75914792	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
11	nsv876966	chr3:75350891-75489636	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv876967	chr3:75350891-75572199	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv529016	chr3:75361506-75836858	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
14	nsv432429	chr3:75363558-75639894	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	nsv432432	chr3:75377715-75639894	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	nsv432433	chr3:75377715-75774501	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
17	nsv517173	chr3:75379085-75647887	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	esv20724	chr3:75381808-75700055	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
19	nsv432434	chr3:75387457-75639894	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv460705	chr3:75388161-75568219	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	nsv590642	chr3:75388161-75568219	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv432435	chr3:75391549-75639894	Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
23	esv1830303	chr3:75391642-75616293	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	esv2754619	chr3:75392078-75564871	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	esv2752016	chr3:75392078-75639894	Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
26	esv2756999	chr3:75392078-76003036	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv2755877	chr3:75392373-75623338	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
28	esv2752919	chr3:75392373-75639894	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
29	nsv432436	chr3:75392373-75639894	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	nsv432441	chr3:75392373-75676582	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	esv2755954	chr3:75392373-75697169	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
32	nsv432446	chr3:75392373-75697169	Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
33	esv2754986	chr3:75392373-75735141	ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
34	esv2752017	chr3:75392373-75754704	Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
35	esv2752018	chr3:75393730-75776083	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
36	esv2756429	chr3:75394265-75595318	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
37	esv2755970	chr3:75394265-75639894	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
38	esv2755824	chr3:75394265-75734088	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
39	esv2756116	chr3:75394265-75735141	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
40	nsv590643	chr3:75394787-75530895	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	nsv876969	chr3:75394787-75561341	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
42	nsv965176	chr3:75395167-75669055	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
43	esv2763755	chr3:75396818-75792056	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
44	nsv1005724	chr3:75396818-75881261	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
45	nsv999165	chr3:75404163-75532419	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
46	nsv1010325	chr3:75406386-75516091	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
47	nsv1013432	chr3:75406386-75549934	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1002268	chr3:75406386-75586793	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
49	nsv1012365	chr3:75406386-75639894	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
50	nsv590644	chr3:75407145-75530895	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75467600-75484400	Weak transcription	Stomach Mucosa	stomach
2	chr3:75467800-75483600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:75469400-75483000	Weak transcription	NHEK	skin
4	chr3:75469600-75483600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:75470000-75482200	Weak transcription	Right Atrium	heart
6	chr3:75470200-75483400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:75470200-75483600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:75470400-75483400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:75470800-75482400	Weak transcription	Psoas Muscle	Psoas
10	chr3:75470800-75482600	Strong transcription	Fetal Stomach	stomach
11	chr3:75471400-75482200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:75471600-75483200	Weak transcription	Brain Anterior Caudate	brain
13	chr3:75471800-75483200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:75471800-75483200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:75471800-75483600	Weak transcription	Fetal Thymus	thymus
16	chr3:75472000-75483200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:75472000-75483600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:75472000-75483600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:75473000-75483800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:75473600-75483400	Weak transcription	Fetal Brain Female	brain
21	chr3:75474000-75482400	Strong transcription	Fetal Intestine Small	intestine
22	chr3:75474000-75482600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:75474400-75483400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:75475000-75482200	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:75475200-75483400	Weak transcription	Brain Germinal Matrix	brain
26	chr3:75475200-75483600	Weak transcription	Fetal Kidney	kidney
27	chr3:75475400-75483400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:75475400-75483400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:75475400-75483600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:75475600-75482200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:75475600-75482800	Weak transcription	Dnd41	blood
32	chr3:75475600-75483600	Weak transcription	Small Intestine	intestine
33	chr3:75475800-75483400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:75475800-75483400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:75475800-75483600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:75476200-75482400	Weak transcription	Placenta	Placenta
37	chr3:75476200-75483200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:75476800-75483600	Weak transcription	Thymus	Thymus
39	chr3:75477000-75483600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:75477200-75483200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:75477200-75483400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:75477200-75483600	Weak transcription	Ovary	ovary
43	chr3:75477200-75483800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:75477400-75482200	Weak transcription	Gastric	stomach
45	chr3:75477400-75483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr3:75477400-75483200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:75477400-75483400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr3:75477400-75483400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:75477400-75483400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:75477400-75483800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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