Variant report

Variant	rs4543228
Chromosome Location	chr5:27234711-27234712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16896570	0.85[AFR][1000 genomes]
rs4285187	0.85[AFR][1000 genomes]
rs59471719	0.85[AFR][1000 genomes]
rs59520904	0.85[AFR][1000 genomes]
rs59951556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60670135	0.85[AFR][1000 genomes]
rs60725865	0.91[AFR][1000 genomes]
rs61216444	0.86[AFR][1000 genomes]
rs61434540	0.86[AFR][1000 genomes]
rs73080152	0.85[AFR][1000 genomes]
rs73080154	0.84[AFR][1000 genomes]
rs73080155	0.86[AFR][1000 genomes]
rs73080159	0.86[AFR][1000 genomes]
rs73080161	0.83[AFR][1000 genomes]
rs73080167	0.86[AFR][1000 genomes]
rs73080185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080187	0.91[AFR][1000 genomes]
rs73080192	0.82[AFR][1000 genomes]
rs73080198	0.85[AFR][1000 genomes]
rs73082131	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27232200-27241200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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