Variant report

Variant	rs73080187
Chromosome Location	chr5:27232685-27232686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:27230159..27233092-chr5:27234206..27238108,4	K562	blood:
2	chr5:27227292..27233296-chr5:27233311..27237362,8	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16896570	0.94[AFR][1000 genomes]
rs4285187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4543228	0.91[AFR][1000 genomes]
rs59471719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59520904	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59951556	0.85[AFR][1000 genomes]
rs60670135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60725865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60793527	0.88[AFR][1000 genomes]
rs61216444	0.81[AFR][1000 genomes]
rs61434540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898433	0.88[AFR][1000 genomes]
rs73080152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080154	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080185	0.91[AFR][1000 genomes]
rs73080192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73082131	0.94[AFR][1000 genomes]
rs73082140	0.88[AFR][1000 genomes]
rs73082150	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917332	chr5:26620698-27232713	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27232200-27241200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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