Variant report

Variant	rs73080161
Chromosome Location	chr5:27221681-27221682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:27141256..27144041-chr5:27219480..27222049,2	K562	blood:
2	chr5:27168464..27170970-chr5:27219066..27221695,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16896570	0.86[AFR][1000 genomes]
rs4285187	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4543228	0.83[AFR][1000 genomes]
rs59471719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59520904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59951556	0.89[AFR][1000 genomes]
rs60670135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60725865	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60793527	0.81[AFR][1000 genomes]
rs61434540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898433	0.81[AFR][1000 genomes]
rs73080152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080185	0.83[AFR][1000 genomes]
rs73080187	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080192	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73082131	0.86[AFR][1000 genomes]
rs73082140	0.81[AFR][1000 genomes]
rs73082150	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917332	chr5:26620698-27232713	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv881006	chr5:27010686-27231314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27217400-27223800	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links