Variant report

Variant	rs73082150
Chromosome Location	chr5:27267676-27267677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16896570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4285187	0.94[AFR][1000 genomes]
rs59471719	0.94[AFR][1000 genomes]
rs59520904	0.94[AFR][1000 genomes]
rs60670135	0.94[AFR][1000 genomes]
rs60725865	0.88[AFR][1000 genomes]
rs60793527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61216444	0.93[AFR][1000 genomes]
rs61434540	0.83[AFR][1000 genomes]
rs6898433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080152	0.80[AFR][1000 genomes]
rs73080155	0.83[AFR][1000 genomes]
rs73080159	0.83[AFR][1000 genomes]
rs73080161	0.81[AFR][1000 genomes]
rs73080167	0.83[AFR][1000 genomes]
rs73080187	0.88[AFR][1000 genomes]
rs73080192	0.91[AFR][1000 genomes]
rs73080198	0.94[AFR][1000 genomes]
rs73082131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73082140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs922547	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv881387	chr5:27264941-27373862	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27266800-27267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:27266800-27267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:27267200-27268000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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