Variant report

Variant	rs4551233
Chromosome Location	chr7:39327538-39327539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10807900	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12669066	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12673726	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12701705	0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12701714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701715	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12701716	0.81[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12701717	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12701718	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701719	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701720	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701721	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701722	0.90[EUR][1000 genomes]
rs12701723	0.88[EUR][1000 genomes]
rs12701725	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12701726	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13233706	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34074172	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34421793	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35489723	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35939093	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3935112	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4072718	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4072719	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4130697	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4130698	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4236358	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4273761	0.82[JPT][hapmap]
rs4302751	0.85[JPT][hapmap]
rs4314553	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4316059	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4442035	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4469355	0.82[JPT][hapmap]
rs4498449	0.81[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4504545	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs4509216	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4530944	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4549686	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4582444	0.81[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4615450	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723841	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4723844	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4723846	0.94[EUR][1000 genomes]
rs4723847	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4723848	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4723849	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4723850	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4989072	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56055019	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62453447	0.86[ASN][1000 genomes]
rs62453457	0.88[ASN][1000 genomes]
rs62455902	0.94[EUR][1000 genomes]
rs6949610	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6949878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797767	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7803411	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9648478	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4551233	ANLN	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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