Variant report

Variant	rs45537432
Chromosome Location	chr9:104365152-104365153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104358419..104360916-chr9:104365030..104366580,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12684278	0.89[EUR][1000 genomes]
rs12685672	0.89[EUR][1000 genomes]
rs1337683	0.81[EUR][1000 genomes]
rs1337710	0.81[EUR][1000 genomes]
rs1415646	0.81[EUR][1000 genomes]
rs1535633	0.89[EUR][1000 genomes]
rs1535634	0.93[EUR][1000 genomes]
rs1570515	0.89[EUR][1000 genomes]
rs1832334	0.83[EUR][1000 genomes]
rs2485524	0.81[EUR][1000 genomes]
rs2485526	0.81[EUR][1000 genomes]
rs2485532	0.81[EUR][1000 genomes]
rs2485535	0.81[EUR][1000 genomes]
rs2506351	0.81[EUR][1000 genomes]
rs2506358	0.81[EUR][1000 genomes]
rs2506360	0.81[EUR][1000 genomes]
rs2506361	0.81[EUR][1000 genomes]
rs28431465	0.89[EUR][1000 genomes]
rs28609108	0.89[EUR][1000 genomes]
rs28692910	0.89[EUR][1000 genomes]
rs4742822	0.81[EUR][1000 genomes]
rs4743482	0.89[EUR][1000 genomes]
rs59881611	0.93[EUR][1000 genomes]
rs59905648	0.89[EUR][1000 genomes]
rs7026717	0.89[EUR][1000 genomes]
rs7028454	0.89[EUR][1000 genomes]
rs7047153	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104362000-104387400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:104364400-104365200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:104364400-104365200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:104364600-104365200	Enhancers	Liver	Liver
5	chr9:104364600-104365200	Active TSS	Brain Hippocampus Middle	brain
6	chr9:104364800-104365200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:104364800-104368200	Weak transcription	Colonic Mucosa	Colon
8	chr9:104365000-104365200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:104365000-104365200	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:104365000-104366400	Weak transcription	Fetal Intestine Small	intestine
11	chr9:104365000-104367400	Weak transcription	Fetal Kidney	kidney

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