Variant report

Variant	rs2485532
Chromosome Location	chr9:104449825-104449826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104441179..104443367-chr9:104448568..104451134,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12684278	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12685672	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1323428	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1337680	0.88[AFR][1000 genomes]
rs1337683	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1337709	0.88[AFR][1000 genomes]
rs1337710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415646	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1535633	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1535634	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1570515	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1572560	0.88[AFR][1000 genomes]
rs1572562	0.88[AFR][1000 genomes]
rs1832334	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1977724	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065965	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2152868	0.88[AFR][1000 genomes]
rs2485524	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2485526	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485529	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2485530	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2485535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485537	0.88[AFR][1000 genomes]
rs2506349	0.88[AFR][1000 genomes]
rs2506351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2506357	0.88[AFR][1000 genomes]
rs2506358	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2506360	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2506361	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2506363	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28431465	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28609108	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28692910	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs45537432	0.81[EUR][1000 genomes]
rs4742822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743482	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59881611	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59905648	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7026717	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7028454	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7047153	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7849059	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104446400-104451200	Weak transcription	Fetal Lung	lung
2	chr9:104446400-104451800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links