Variant report
| Variant | rs7849059 |
|---|---|
| Chromosome Location | chr9:104482877-104482878 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1337677 | 0.94[EUR][1000 genomes] |
| rs1337683 | 0.82[EUR][1000 genomes] |
| rs1337710 | 0.82[EUR][1000 genomes] |
| rs1415646 | 0.82[EUR][1000 genomes] |
| rs1415651 | 0.88[EUR][1000 genomes] |
| rs16920763 | 0.87[AMR][1000 genomes] |
| rs1832334 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2065964 | 0.82[EUR][1000 genomes] |
| rs2065965 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2210991 | 0.84[ASN][1000 genomes] |
| rs2210993 | 0.84[ASN][1000 genomes] |
| rs2485524 | 0.82[EUR][1000 genomes] |
| rs2485526 | 0.82[EUR][1000 genomes] |
| rs2485529 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2485530 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2485532 | 0.82[EUR][1000 genomes] |
| rs2485535 | 0.82[EUR][1000 genomes] |
| rs2506351 | 0.82[EUR][1000 genomes] |
| rs2506358 | 0.82[EUR][1000 genomes] |
| rs2506360 | 0.82[EUR][1000 genomes] |
| rs2506361 | 0.82[EUR][1000 genomes] |
| rs2506363 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4742822 | 0.82[EUR][1000 genomes] |
| rs7390803 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046975 | chr9:104167583-104659873 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv949579 | chr9:104229820-104512923 | Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046590 | chr9:104450624-104848588 | Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:104480800-104491400 | Weak transcription | Liver | Liver |
