Variant report
Variant | rs2506363 |
---|---|
Chromosome Location | chr9:104476730-104476731 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:104472870..104474526-chr9:104475820..104477413,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1323428 | 0.82[ASN][1000 genomes] |
rs1337677 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1337683 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1337710 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1415646 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1415651 | 0.88[EUR][1000 genomes] |
rs1832334 | 0.85[EUR][1000 genomes] |
rs2065964 | 0.82[EUR][1000 genomes] |
rs2065965 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2152866 | 0.88[ASN][1000 genomes] |
rs2210991 | 0.91[ASN][1000 genomes] |
rs2210993 | 0.83[ASN][1000 genomes] |
rs2485524 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2485526 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2485529 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2485530 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2485532 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2485535 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2506351 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2506358 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2506360 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2506361 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2900317 | 0.90[YRI][hapmap] |
rs3739724 | 0.81[MEX][hapmap] |
rs4742822 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7390803 | 0.82[EUR][1000 genomes] |
rs7849059 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs945870 | 0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1046975 | chr9:104167583-104659873 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv949579 | chr9:104229820-104512923 | Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
3 | nsv831672 | chr9:104300755-104480849 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
4 | nsv1046590 | chr9:104450624-104848588 | Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:104473800-104478000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |