Variant report

Variant	rs59881611
Chromosome Location	chr9:104388698-104388699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104387846..104390209-chr9:107506903..107509823,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1004362	0.96[ASN][1000 genomes]
rs10989565	0.80[ASN][1000 genomes]
rs11791809	0.95[ASN][1000 genomes]
rs12683341	0.96[ASN][1000 genomes]
rs12683993	0.94[ASN][1000 genomes]
rs12684278	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685672	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1323428	0.84[EUR][1000 genomes]
rs1337683	0.87[EUR][1000 genomes]
rs1337710	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1415646	0.87[EUR][1000 genomes]
rs1535633	0.96[EUR][1000 genomes]
rs1535634	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1570515	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1832334	0.83[EUR][1000 genomes]
rs2485524	0.87[EUR][1000 genomes]
rs2485526	0.87[EUR][1000 genomes]
rs2485532	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2485535	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2506351	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2506358	0.87[EUR][1000 genomes]
rs2506360	0.87[EUR][1000 genomes]
rs2506361	0.87[EUR][1000 genomes]
rs28431465	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28609108	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28692910	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4460436	0.95[ASN][1000 genomes]
rs45537432	0.93[EUR][1000 genomes]
rs4742822	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743475	0.96[ASN][1000 genomes]
rs4743478	0.95[ASN][1000 genomes]
rs4743482	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59905648	0.96[EUR][1000 genomes]
rs62577429	0.95[ASN][1000 genomes]
rs62577430	0.90[ASN][1000 genomes]
rs7026717	0.96[EUR][1000 genomes]
rs7028454	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7047153	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72745360	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv6642	chr9:104385959-104398737	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104382400-104392200	Weak transcription	Liver	Liver
2	chr9:104387600-104389400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:104387600-104390400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:104387800-104390400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:104388000-104389000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:104388000-104389400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:104388200-104389600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr9:104388400-104389400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:104388600-104388800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:104388600-104389000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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