Variant report

Variant	rs4556111
Chromosome Location	chr8:113382838-113382839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10098649	0.84[YRI][hapmap]
rs10156319	0.85[YRI][hapmap]
rs12156373	0.85[CEU][hapmap]
rs12681029	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs1303762	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1388965	0.88[MEX][hapmap];0.81[TSI][hapmap]
rs1420851	0.81[CEU][hapmap]
rs1420854	0.88[MEX][hapmap]
rs1420858	0.89[CEU][hapmap]
rs1420859	0.93[CEU][hapmap];0.87[MEX][hapmap];0.87[EUR][1000 genomes]
rs1492674	0.85[CEU][hapmap]
rs1492678	0.81[TSI][hapmap]
rs16883388	0.85[YRI][hapmap]
rs1873746	0.84[MEX][hapmap];0.81[TSI][hapmap]
rs1895014	0.80[CEU][hapmap]
rs2016614	1.00[CEU][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2131298	0.88[MEX][hapmap]
rs2172352	0.92[CEU][hapmap]
rs28453001	0.82[EUR][1000 genomes]
rs28688503	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3950676	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs41340951	0.84[MEX][hapmap]
rs4143627	0.81[CEU][hapmap];0.88[MEX][hapmap]
rs41467949	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4563913	0.88[MEX][hapmap];0.81[TSI][hapmap]
rs4601350	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs4876281	0.92[CEU][hapmap];0.85[TSI][hapmap]
rs4876468	0.81[TSI][hapmap]
rs6469413	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs6469414	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7000912	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7003500	0.81[TSI][hapmap]
rs7826278	0.87[EUR][1000 genomes]
rs7845628	0.85[CEU][hapmap];0.92[MEX][hapmap];0.82[EUR][1000 genomes]
rs7845794	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs929685	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs929687	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4556111	TTC35	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113382000-113383200	Weak transcription	Pancreas	Pancrea

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