Variant report

Variant	rs4601350
Chromosome Location	chr8:113329886-113329887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10105433	0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs10808452	0.85[AMR][1000 genomes]
rs11786035	0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs11786941	0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs1303762	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1420849	0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1420850	0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs1420851	0.83[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs1420854	1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1420858	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1420859	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1492674	0.90[CEU][hapmap]
rs1592624	0.83[JPT][hapmap]
rs1592625	0.88[JPT][hapmap]
rs1833320	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1833321	0.86[AFR][1000 genomes]
rs1895014	0.81[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs1895015	0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs1895016	0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs2016614	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2172352	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28453001	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28688503	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28688794	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2883277	0.86[AFR][1000 genomes]
rs4143627	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4412394	0.86[AFR][1000 genomes]
rs4556111	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs4876281	0.83[CEU][hapmap]
rs4876459	0.82[AMR][1000 genomes]
rs4876460	0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs6469414	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6983302	0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs6992636	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7000912	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7003531	0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs7016230	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs7018166	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7816045	0.88[AMR][1000 genomes]
rs7820413	0.80[AMR][1000 genomes]
rs7821683	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7826278	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7830950	0.88[AMR][1000 genomes]
rs7845628	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7845794	0.83[CEU][hapmap]
rs929684	0.88[JPT][hapmap];0.88[AMR][1000 genomes]
rs929685	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs929687	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297467	0.88[AMR][1000 genomes]
rs950985	0.88[JPT][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113288800-113331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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