Variant report

Variant	rs7018166
Chromosome Location	chr8:113288576-113288577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10105433	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10808452	0.85[ASN][1000 genomes]
rs11786035	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11786941	0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1303762	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1420849	0.81[JPT][hapmap]
rs1420850	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1420851	0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1420854	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1420858	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1420859	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1592624	0.80[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs1592625	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1833320	0.88[ASN][1000 genomes]
rs1895014	0.93[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1895015	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1895016	0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2016614	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2123490	0.80[CEU][hapmap]
rs2172352	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs28688503	0.80[ASN][1000 genomes]
rs28688794	0.96[ASN][1000 genomes]
rs4143627	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4601350	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4876459	0.88[ASN][1000 genomes]
rs4876460	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6469418	0.83[CEU][hapmap]
rs6983302	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6992636	0.95[ASN][1000 genomes]
rs7000912	0.84[ASN][1000 genomes]
rs7003531	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7016230	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs7816045	0.88[ASN][1000 genomes]
rs7821683	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7826278	0.86[ASN][1000 genomes]
rs7830950	0.88[ASN][1000 genomes]
rs929684	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs929685	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs929687	0.94[ASN][1000 genomes]
rs9297467	0.88[ASN][1000 genomes]
rs950985	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113288000-113288800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr8:113288400-113288800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:113288400-113289000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:113288400-113289000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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