Variant report

Variant	rs1420849
Chromosome Location	chr8:113238000-113238001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10105433	0.89[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808452	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11786035	0.84[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11786941	0.89[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12114136	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1303762	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1420850	0.89[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1420851	0.86[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1420854	0.84[ASW][hapmap];0.82[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1420858	1.00[YRI][hapmap]
rs1420859	0.84[ASW][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1592624	1.00[ASW][hapmap];0.89[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1592625	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1833320	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1833321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895014	0.88[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895015	0.89[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895016	0.88[CEU][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895018	0.94[ASN][1000 genomes]
rs2016614	0.84[ASW][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2052343	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052345	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2172352	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs2243478	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2353273	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28688794	0.83[AFR][1000 genomes]
rs2883277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4143627	0.84[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4412394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4601350	0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4876278	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876279	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876450	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876459	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4876460	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983302	0.92[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6992636	0.83[AFR][1000 genomes]
rs7003531	0.89[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7016230	0.81[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs7018166	0.81[JPT][hapmap]
rs7816045	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821683	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7826278	0.86[AFR][1000 genomes]
rs7830950	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7835695	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs870523	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs888255	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs929684	0.86[ASW][hapmap];0.85[CEU][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs929685	0.84[ASW][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];0.83[AFR][1000 genomes]
rs929687	0.81[AFR][1000 genomes]
rs9297467	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs950985	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113235200-113265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113235800-113238200	Weak transcription	NHEK	skin

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