Variant report

Variant	rs7821683
Chromosome Location	chr8:113387456-113387457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102371552..102373757-chr8:113387253..113389057,2	MCF-7	breast:
2	chr8:112946347..112947268-chr8:113386770..113387527,2	MCF-7	breast:
3	chr8:112976151..112977081-chr8:113386595..113387462,4	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087026	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10100450	0.90[CEU][hapmap]
rs10105433	0.88[JPT][hapmap]
rs1020598	0.90[CEU][hapmap]
rs11786035	0.88[JPT][hapmap]
rs11786941	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs12681029	0.84[AMR][1000 genomes]
rs1303762	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1420849	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1420850	0.88[JPT][hapmap]
rs1420851	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1420854	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1420858	0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1420859	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs1542317	0.82[AMR][1000 genomes]
rs1592624	0.83[JPT][hapmap]
rs1592625	0.88[JPT][hapmap]
rs1895014	0.88[JPT][hapmap]
rs1895015	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs1895016	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs2016614	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2123490	0.90[CEU][hapmap];0.85[AMR][1000 genomes]
rs2172352	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28688503	0.98[ASN][1000 genomes]
rs4143627	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4146364	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs4601350	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs4876460	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs6469414	0.95[ASN][1000 genomes]
rs6469418	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs6469422	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs6983302	0.88[JPT][hapmap]
rs7000912	0.94[ASN][1000 genomes]
rs7002364	0.82[AMR][1000 genomes]
rs7003531	0.88[JPT][hapmap]
rs7016230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018166	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs7819392	0.82[AMR][1000 genomes]
rs7826278	0.89[ASN][1000 genomes]
rs7837715	0.90[CEU][hapmap]
rs929684	0.88[JPT][hapmap]
rs929685	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs950985	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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