Variant report

Variant	rs4558892
Chromosome Location	chr4:78067743-78067744
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77992562..77994708-chr4:78066148..78068888,2	MCF-7	breast:
2	chr4:77996103..77998290-chr4:78066970..78070859,4	MCF-7	breast:
3	chr4:77994701..77998612-chr4:78066098..78069979,6	MCF-7	breast:
4	chr4:78067084..78069572-chr4:78071831..78074311,3	MCF-7	breast:
5	chr4:78066334..78068831-chr4:78072502..78074956,2	K562	blood:
6	chr4:78066677..78070110-chr4:78071509..78075152,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201641	Chromatin interaction
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10025838	0.90[EUR][1000 genomes]
rs11097704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731592	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12504752	0.84[ASN][1000 genomes]
rs12509168	0.90[EUR][1000 genomes]
rs12640093	0.90[EUR][1000 genomes]
rs28464714	0.96[ASN][1000 genomes]
rs4241604	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4280759	0.90[EUR][1000 genomes]
rs4365751	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4382065	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4518274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4547817	0.90[EUR][1000 genomes]
rs4563522	0.90[EUR][1000 genomes]
rs4859473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859756	0.83[EUR][1000 genomes]
rs6532867	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532868	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532870	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532871	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6846698	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78065600-78069200	Enhancers	Fetal Intestine Large	intestine
2	chr4:78065800-78068200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr4:78065800-78069400	Enhancers	Fetal Intestine Small	intestine
4	chr4:78066400-78068400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:78066400-78069400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:78066400-78069800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:78066600-78068200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:78066600-78068400	Enhancers	Primary B cells from peripheral blood	blood
9	chr4:78066600-78068600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr4:78066600-78068800	Enhancers	Primary T cells from cord blood	blood
11	chr4:78066600-78068800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:78066800-78067800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:78066800-78067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:78066800-78067800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:78066800-78068000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr4:78066800-78068200	Enhancers	Stomach Mucosa	stomach
17	chr4:78066800-78068400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:78066800-78068400	Enhancers	HUVEC	blood vessel
19	chr4:78066800-78068600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:78066800-78068600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:78066800-78068600	Enhancers	Fetal Thymus	thymus
22	chr4:78066800-78068800	Enhancers	K562	blood
23	chr4:78067000-78067800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:78067000-78068000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:78067000-78068000	Enhancers	Duodenum Mucosa	Duodenum
26	chr4:78067000-78068200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:78067000-78068200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:78067000-78068200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:78067000-78068200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:78067000-78068200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:78067000-78068200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:78067000-78068200	Enhancers	Colonic Mucosa	Colon
33	chr4:78067000-78068200	Enhancers	NHEK	skin
34	chr4:78067000-78068400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:78067000-78068600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:78067000-78068600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:78067000-78068600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:78067000-78069200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr4:78067200-78067800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr4:78067200-78067800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:78067200-78067800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr4:78067200-78067800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:78067200-78067800	Active TSS	Fetal Brain Male	brain
44	chr4:78067200-78067800	Bivalent Enhancer	Osteobl	bone
45	chr4:78067200-78068000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr4:78067200-78068000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr4:78067200-78068000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr4:78067200-78068000	Enhancers	HMEC	breast
49	chr4:78067200-78068200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr4:78067200-78068200	Enhancers	HUES64 Cell Line	embryonic stem cell

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