Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77993628..77998489-chr4:78099407..78102075,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10025838	0.95[EUR][1000 genomes]
rs11097704	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731592	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504752	0.96[ASN][1000 genomes]
rs12509168	0.96[EUR][1000 genomes]
rs12640093	0.95[EUR][1000 genomes]
rs28464714	0.82[ASN][1000 genomes]
rs4241604	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4280759	0.95[EUR][1000 genomes]
rs4365751	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4382065	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4518274	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4547817	0.95[EUR][1000 genomes]
rs4558892	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4563522	0.95[EUR][1000 genomes]
rs4859473	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859756	0.88[EUR][1000 genomes]
rs6532867	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532868	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532870	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846698	0.96[EUR][1000 genomes]
rs7654920	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
2	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
3	chr4:78090400-78109800	Weak transcription	Gastric	stomach
4	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
6	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
7	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
9	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
10	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
11	chr4:78099400-78111200	Weak transcription	NHEK	skin
12	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:78100800-78105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:78101000-78108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:78101200-78108000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:78101200-78109600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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