Variant report

Variant	rs4563356
Chromosome Location	chr3:34309015-34309016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34237804..34239515-chr3:34306998..34309662,2	K562	blood:
2	chr3:34307556..34310522-chr3:34325293..34326875,2	K562	blood:
3	chr3:34307945..34310504-chr3:34315183..34316833,2	MCF-7	breast:
4	chr3:34306937..34309088-chr3:34310627..34313215,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1356609	0.95[ASN][1000 genomes]
rs1356610	0.96[ASN][1000 genomes]
rs1401340	0.93[ASN][1000 genomes]
rs2336570	0.89[ASN][1000 genomes]
rs4577415	0.93[ASN][1000 genomes]
rs4678668	0.94[ASN][1000 genomes]
rs4678673	0.95[ASN][1000 genomes]
rs4678674	0.95[ASN][1000 genomes]
rs56143593	0.93[ASN][1000 genomes]
rs62248525	0.95[ASN][1000 genomes]
rs62248526	0.83[ASN][1000 genomes]
rs73054790	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4563356	DLEC1	cis	parietal	SCAN
rs4563356	ITGA9	cis	parietal	SCAN
rs4563356	SUSD5	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34302000-34309400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:34303800-34309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:34304600-34309600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:34304800-34309200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:34305400-34309200	Weak transcription	Fetal Intestine Large	intestine
7	chr3:34306600-34309200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:34306600-34309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:34307000-34309200	Weak transcription	Aorta	Aorta
10	chr3:34307000-34309600	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:34307000-34309600	Weak transcription	Fetal Thymus	thymus
12	chr3:34307200-34309200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:34307400-34309200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:34307800-34309200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:34307800-34309400	Weak transcription	Thymus	Thymus
16	chr3:34308600-34309200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:34308800-34309200	Weak transcription	Fetal Heart	heart
18	chr3:34309000-34309200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr3:34309000-34310200	Enhancers	Fetal Intestine Small	intestine
20	chr3:34309000-34310400	Enhancers	Rectal Mucosa Donor 31	rectum

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