Variant report

Variant	rs73054790
Chromosome Location	chr3:34287379-34287380
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34286135..34288097-chr3:34290697..34293518,2	K562	blood:
2	chr3:34285723..34288551-chr3:34291607..34294875,3	K562	blood:
3	chr3:34276733..34278426-chr3:34286932..34289441,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1007675	0.90[ASN][1000 genomes]
rs12715242	0.85[ASN][1000 genomes]
rs1356609	0.86[ASN][1000 genomes]
rs1356610	0.83[ASN][1000 genomes]
rs1401340	0.88[ASN][1000 genomes]
rs1401342	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1401343	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1518890	0.91[ASN][1000 genomes]
rs1554320	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336570	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3890186	0.88[ASN][1000 genomes]
rs3890187	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3890188	0.88[ASN][1000 genomes]
rs4280582	0.88[ASN][1000 genomes]
rs4297996	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4378923	0.88[ASN][1000 genomes]
rs4413270	0.88[ASN][1000 genomes]
rs4507206	0.86[ASN][1000 genomes]
rs4563356	0.82[ASN][1000 genomes]
rs4572719	0.86[ASN][1000 genomes]
rs4577415	0.88[ASN][1000 genomes]
rs4580496	0.88[ASN][1000 genomes]
rs4678668	0.87[ASN][1000 genomes]
rs4678673	0.86[ASN][1000 genomes]
rs4678674	0.86[ASN][1000 genomes]
rs56143593	0.88[ASN][1000 genomes]
rs62248525	0.86[ASN][1000 genomes]
rs6550261	0.88[ASN][1000 genomes]
rs6550262	0.88[ASN][1000 genomes]
rs6550267	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771362	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73054764	0.88[ASN][1000 genomes]
rs7610661	0.88[ASN][1000 genomes]
rs7623240	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7630757	0.88[ASN][1000 genomes]
rs7630778	0.88[ASN][1000 genomes]
rs7632191	0.86[ASN][1000 genomes]
rs7641190	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7641364	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9824245	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829978	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34283200-34289600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:34285800-34293600	Weak transcription	Aorta	Aorta

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