Variant report

Variant	rs4678673
Chromosome Location	chr3:34306603-34306604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34306531..34307201-chr3:34318306..34319090,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12494048	0.94[EUR][1000 genomes]
rs1356609	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356610	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1401340	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1401342	0.82[AMR][1000 genomes]
rs1401343	0.81[AMR][1000 genomes]
rs2336570	0.94[ASN][1000 genomes]
rs4563356	0.95[ASN][1000 genomes]
rs4577415	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4678668	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678674	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56143593	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62248525	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62248526	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62248528	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6771362	0.81[AMR][1000 genomes]
rs73054790	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34302000-34307000	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:34302000-34307000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:34302000-34309400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:34302400-34307800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:34303800-34309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:34304200-34307000	Enhancers	Fetal Muscle Leg	muscle
7	chr3:34304600-34306800	Weak transcription	Aorta	Aorta
8	chr3:34304600-34309600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:34304800-34309200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:34305200-34309000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:34305200-34309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:34305400-34309000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:34305400-34309200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:34305800-34307000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr3:34305800-34307200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:34305800-34307200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr3:34305800-34307400	Weak transcription	Fetal Brain Female	brain
19	chr3:34306200-34306800	Enhancers	Adipose Nuclei	Adipose
20	chr3:34306200-34307800	Enhancers	Thymus	Thymus
21	chr3:34306200-34308800	Enhancers	Fetal Heart	heart
22	chr3:34306600-34306800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:34306600-34307000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:34306600-34307000	Enhancers	Fetal Thymus	thymus
25	chr3:34306600-34307200	Enhancers	Left Ventricle	heart
26	chr3:34306600-34309200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:34306600-34309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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