Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33922283..33924139-chr6:33925497..33927060,2	K562	blood:
2	chr6:33925599..33928278-chr6:33928837..33930807,2	K562	blood:
3	chr6:33913064..33919897-chr6:33920862..33926806,7	K562	blood:
4	chr6:33919883..33922480-chr6:33924256..33927487,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10733180	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947469	0.84[EUR][1000 genomes]
rs4478401	0.81[AFR][1000 genomes]
rs4583982	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7771788	0.80[EUR][1000 genomes]
rs7771877	0.80[EUR][1000 genomes]
rs7772005	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296104	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357167	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357168	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9366834	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394181	0.81[EUR][1000 genomes]
rs9461934	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33919200-33926200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:33924000-33926200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:33924600-33927800	Enhancers	Fetal Brain Female	brain
4	chr6:33924800-33930000	Enhancers	Fetal Brain Male	brain
5	chr6:33925200-33927400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:33925200-33928600	Enhancers	Brain Germinal Matrix	brain
7	chr6:33925400-33926200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:33925400-33926400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:33925400-33926400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:33925400-33926600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:33925400-33926800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:33925400-33926800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:33925400-33926800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:33925400-33927000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:33925400-33927200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:33925600-33926400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:33925600-33926600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:33925600-33926600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:33925800-33926200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:33925800-33926800	Enhancers	HUES64 Cell Line	embryonic stem cell

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