Variant report

Variant	rs7772005
Chromosome Location	chr6:33915676-33915677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10733180	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947469	0.98[EUR][1000 genomes]
rs2495961	0.83[AFR][1000 genomes]
rs2495962	0.83[AFR][1000 genomes]
rs2499747	0.82[AFR][1000 genomes]
rs2499748	0.82[AFR][1000 genomes]
rs4571557	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4583982	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7771788	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771877	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9296104	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357167	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357168	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366834	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368787	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9380390	0.81[EUR][1000 genomes]
rs9394181	0.93[EUR][1000 genomes]
rs9461934	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7772005	C6orf1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33912600-33918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33913000-33917800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33913000-33917800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:33914200-33918200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33915400-33917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:33915400-33918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links